Unpack the examples.zip file
run with command line:
"exe -f 2926 682 -s 682 -n 1 inter.tab model.txt pml.tab act.tab ina.tab wl.tab result.out predict.out predppi.tab predbind.tab 3 protlen.tab 1000 pmcover.tab"
where exe is the compiled executable and result.out and predict.out are the ouput files.
Double check your output with result.correct_out, predict.correct_out, and stdout.correct_out
run with only exe to see the explanation of the arguments
See original paper for more details.