Identifying complexes

• 1st column: complex name
  Note:
  • A complex name starts with 'MP_' comes from MIPS, and is followed by the MIPS category number.
  • A complex name starts with 'SG_' comes from SGD, and is followed by the SGD category number.
  • A complex name starts with 'CC_', 'SN_', or 'KG_' is hand curated.
  • A complex name starts with 'merged:' is merged from complexes in several different sources, whose names are listed.
• 2nd column: protein in the complex (ORF name)

Predicted complex and its essential proteins

• 1st column: complex ID
• 2nd column: protein in the complex (ORF name)
• 3rd column: protein in the complex (gene name)
• 4th column: essential protein or not (0: non-essential. 1: essential)

• 1st column: Hamming distance
• 2nd column: Jaccard coefficient
• 3rd column: predicted complex
• 4th column: reference complex
• 5th column: size of overlap between predicted and reference complexes
• 6th column: size of predicted complex
• 7th column: size of reference complex

• 1st column: predicted complex ID
• 2nd column: size of the predicted complex
• 3rd column: number of essential proteins in the complex
• 4th column: proportion of essential proteins in the complex
• 5th column: the reference complex that matches the best (N/A if none matched)

HACO source code for Linux g++
LogitBoost source code for Linux g++
See Usage info by running the command without argument. Here are the required libraries:
Basic utilities
Basic clustering

Names for a subset of the hand curated complexes

• 1st column: complex name
• 2nd column: ORF names for proteins in the complex
• 3rd column: gene names for protein in the complex

DIP core interactions

Correlation of growth fitness of homozygous deletion

Time course expression data
Gene names
76 good conditions